STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
upf2Uncharacterized protein. (1225 aa)    
Predicted Functional Partners:
rnps1
RRM domain-containing protein.
    
 0.997
upf1
Uncharacterized protein.
   
 0.995
ENSCMIP00000031900
RRM domain-containing protein.
    
 0.990
smg1
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
   
 
 0.974
zgrf1
Uncharacterized protein.
   
 0.969
srrm1
PWI domain-containing protein.
    
 
 0.953
upf3b
Uncharacterized protein.
   
 0.927
ENSCMIP00000033691
Smg4_UPF3 domain-containing protein.
   
 0.927
LOC103185776
Smg4_UPF3 domain-containing protein.
   
 0.927
casc3
Btz domain-containing protein.
    
 0.899
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.