STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alkbh4Uncharacterized protein. (322 aa)    
Predicted Functional Partners:
alkbh7
Uncharacterized protein.
   
  
 0.653
alkbh1
Fe2OG dioxygenase domain-containing protein.
   
  
 0.642
med28
Uncharacterized protein.
      
 0.615
n6amt1
MTS domain-containing protein.
      
 0.596
jmjd4
JmjC domain-containing protein.
   
  
 0.577
d2hgdh
FAD-binding PCMH-type domain-containing protein.
      
 0.551
alkbh2
Fe2OG dioxygenase domain-containing protein.
      
 0.551
sycp1
Uncharacterized protein.
      
 0.549
dohh
Deoxyhypusine hydroxylase; Catalyzes the hydroxylation of the N(6)-(4-aminobutyl)-L- lysine intermediate to form hypusine, an essential post-translational modification only found in mature eIF-5A factor; Belongs to the deoxyhypusine hydroxylase family.
   
    0.497
alkbh8
Uncharacterized protein.
   
  
 0.476
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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