trub1 protein (Callorhinchus milii) - STRING interaction network

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second shell of interactors

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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Score

trub1

Uncharacterized protein. (262 aa)

Predicted Functional Partners:

nhp2

0.988

gar1

0.984

nop56

0.972

shq1

0.971

nop58

0.966

LOC103173934

0.917

naf1

0.913

tert

0.873

pus1

0.859

wdr12

0.850

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103173934	gar1	ENSCMIP00000005578	ENSCMIP00000015143	Uncharacterized protein.	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	0.982
LOC103173934	nhp2	ENSCMIP00000005578	ENSCMIP00000036592	Uncharacterized protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.975
LOC103173934	nop56	ENSCMIP00000005578	ENSCMIP00000000215	Uncharacterized protein.	Nop domain-containing protein.	0.445
LOC103173934	shq1	ENSCMIP00000005578	ENSCMIP00000015015	Uncharacterized protein.	CS domain-containing protein.	0.450
LOC103173934	tert	ENSCMIP00000005578	ENSCMIP00000048136	Uncharacterized protein.	Telomerase reverse transcriptase; Telomerase is a ribonucleoprotein enzyme essential for the replication of chromosome termini in most eukaryotes. It elongates telomeres. It is a reverse transcriptase that adds simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme.	0.892
LOC103173934	trub1	ENSCMIP00000005578	ENSCMIP00000028982	Uncharacterized protein.	Uncharacterized protein.	0.917
gar1	LOC103173934	ENSCMIP00000015143	ENSCMIP00000005578	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	Uncharacterized protein.	0.982
gar1	naf1	ENSCMIP00000015143	ENSCMIP00000019753	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	Uncharacterized protein.	0.775
gar1	nhp2	ENSCMIP00000015143	ENSCMIP00000036592	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.999
gar1	nop56	ENSCMIP00000015143	ENSCMIP00000000215	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	Nop domain-containing protein.	0.944
gar1	nop58	ENSCMIP00000015143	ENSCMIP00000030744	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	Nop domain-containing protein.	0.957
gar1	shq1	ENSCMIP00000015143	ENSCMIP00000015015	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	CS domain-containing protein.	0.963
gar1	tert	ENSCMIP00000015143	ENSCMIP00000048136	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	Telomerase reverse transcriptase; Telomerase is a ribonucleoprotein enzyme essential for the replication of chromosome termini in most eukaryotes. It elongates telomeres. It is a reverse transcriptase that adds simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme.	0.883
gar1	trub1	ENSCMIP00000015143	ENSCMIP00000028982	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	Uncharacterized protein.	0.984
gar1	wdr12	ENSCMIP00000015143	ENSCMIP00000036007	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.502
naf1	gar1	ENSCMIP00000019753	ENSCMIP00000015143	Uncharacterized protein.	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	0.775
naf1	nhp2	ENSCMIP00000019753	ENSCMIP00000036592	Uncharacterized protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.966
naf1	nop56	ENSCMIP00000019753	ENSCMIP00000000215	Uncharacterized protein.	Nop domain-containing protein.	0.460
naf1	nop58	ENSCMIP00000019753	ENSCMIP00000030744	Uncharacterized protein.	Nop domain-containing protein.	0.547
naf1	shq1	ENSCMIP00000019753	ENSCMIP00000015015	Uncharacterized protein.	CS domain-containing protein.	0.794