STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sf3b1TOG domain-containing protein. (1329 aa)    
Predicted Functional Partners:
ENSCMIP00000003367
Uncharacterized protein.
   
 0.999
ddx42
Uncharacterized protein.
   
 0.999
Phf5a
Uncharacterized protein.
   
 0.999
sf3b5
Splicing factor 3B subunit 5; Belongs to the SF3B5 family.
    
 0.999
sf3b6
RRM domain-containing protein.
   
 0.999
sf3b3
CPSF_A domain-containing protein.
   
 0.999
sf3a2
Matrin-type domain-containing protein.
    
 0.997
u2af2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
 
 
 
 0.997
snrpa1
LRRcap domain-containing protein.
   
 0.997
ddx46
Uncharacterized protein.
   
 0.997
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.