STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Stk35Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (362 aa)    
Predicted Functional Partners:
becn1
Uncharacterized protein.
    
 0.838
pik3r4
Uncharacterized protein.
    
 0.834
pik3c3
Phosphatidylinositol 3-kinase catalytic subunit type 3.
    
 0.834
atg13
Autophagy-related protein 13; Belongs to the ATG13 family. Metazoan subfamily.
   
 0.819
rb1cc1
RB1-inducible coiled-coil protein 1.
    
 0.812
Atg101
Uncharacterized protein.
    
 0.798
atg14
Uncharacterized protein.
    
 0.754
LOC103190656
Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.
   
 
 0.713
LOC103179261
Microtubule-associated proteins 1A/1B light chain 3C-like protein.
   
 0.710
map1lc3a
Uncharacterized protein.
   
 0.710
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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