STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ube2hUBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (183 aa)    
Predicted Functional Partners:
ube2w
UBIQUITIN_CONJUGAT_2 domain-containing protein.
   
 0.879
uba3
Ubiquitin-activating enzyme 3.
    
 0.870
ube2j1
UBIQUITIN_CONJUGAT_2 domain-containing protein.
   
 0.846
ube2k
Uncharacterized protein; Belongs to the ubiquitin-conjugating enzyme family.
   
0.802
LOC103173873
UBA_e1_C domain-containing protein.
    
 0.798
uba6
G_PROTEIN_RECEP_F1_2 domain-containing protein.
    
 0.798
uba7
UBA_e1_C domain-containing protein.
    
 0.798
ube2j2
Ubiquitin-conjugating enzyme E2, J2.
     
 0.794
c1qtnf12
C1q domain-containing protein.
     
 0.794
atg7
Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for cytoplasm to vacuole transport (Cvt) and autophagy. Activates ATG12 for its conjugation with ATG5 as well as the ATG8 family proteins for their conjugation with phosphatidylethanolamine. Both systems are needed for the ATG8 association to Cvt vesicles and autophagosomes membranes. Required for autophagic death induced by caspase-8 inhibition. Required for mitophagy which contributes to regulate mitochondrial quantity and quality by eliminating the mitochondria [...]
    
 0.786
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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