STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slc38a8Aa_trans domain-containing protein. (416 aa)    
Predicted Functional Partners:
LOC103177256
Uncharacterized protein.
   
 0.590
slc38a9
Uncharacterized protein.
      
 0.590
Lamtor2
Robl_LC7 domain-containing protein.
    
 0.574
rims2
Uncharacterized protein.
   
 
 0.546
ENSCMIP00000008261
Uncharacterized protein.
    
 0.524
lamtor5
Hepatitis B virus X-interacting protein-like protein.
    
 0.517
lamtor4
Uncharacterized protein.
    
 0.483
ENSCMIP00000018216
MFS domain-containing protein.
      
 0.426
slc25a34
Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.426
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.