STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ppfibp1PTPRF interacting protein-binding protein 1. (1017 aa)    
Predicted Functional Partners:
LOC103174088
Uncharacterized protein.
   
 0.614
ENSCMIP00000001133
SAM domain-containing protein.
   
0.614
LOC103174302
Uncharacterized protein.
   
0.614
ppfia2
Uncharacterized protein.
   
0.614
ppfia1
Uncharacterized protein.
   
0.614
LOC103179075
Uncharacterized protein.
   
0.614
LOC103173605
Uncharacterized protein.
   
 0.611
kazn
Kazrin, periplakin interacting protein.
   
 0.576
ENSCMIP00000001654
Uncharacterized protein.
     
 0.444
ptprf
Uncharacterized protein.
     
 0.444
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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