STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vps9d1VPS9 domain-containing protein. (675 aa)    
Predicted Functional Partners:
asb3
Uncharacterized protein.
      
 0.553
polr3a
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
      
 0.553
znf276
Uncharacterized protein.
      
 0.553
pno1
KH domain-containing protein.
      
 0.553
LOC103181892
Uncharacterized protein.
      
 0.549
ENSCMIP00000041192
RRM domain-containing protein.
      
 0.548
dbndd1
Dysbindin domain-containing protein 1-like protein.
      
 0.502
def8
Phorbol-ester/DAG-type domain-containing protein.
      
 0.435
mns1
Uncharacterized protein.
      
 0.426
hibadh
3-hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family.
      
 0.424
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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