STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCMIP00000032608UBIQUITIN_CONJUGAT_2 domain-containing protein. (79 aa)    
Predicted Functional Partners:
leo1
RNA polymerase-associated protein LEO1.
    
 0.971
ENSCMIP00000049296
SAP domain-containing protein.
    
 0.927
ENSCMIP00000000775
E3 ubiquitin protein ligase.
    
 0.913
Ubc
Ubiquitin-like domain-containing protein.
   
 0.866
rps27a
Ubiquitin-like domain-containing protein.
   
 0.852
trip12
Putative E3 ubiquitin-protein ligase TRIP12.
    
 0.832
ENSCMIP00000004389
PCNA_N domain-containing protein.
   
 0.817
LOC103173873
UBA_e1_C domain-containing protein.
   
 0.789
uba6
G_PROTEIN_RECEP_F1_2 domain-containing protein.
   
 0.789
uba7
UBA_e1_C domain-containing protein.
   
 0.789
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.