STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cdk5rap1Uncharacterized protein. (518 aa)    
Predicted Functional Partners:
exosc3
KH_dom_type_1 domain-containing protein.
    
 
 0.887
prpf40a
Uncharacterized protein.
 
 
    0.867
exosc5
Uncharacterized protein.
    
   0.844
tmco4
Uncharacterized protein.
 
      0.733
taf8
Transcription initiation factor TFIID subunit 8.
 
      0.644
immp1l
Mitochondrial inner membrane protease subunit.
 
    0.611
urod
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
  
 
 0.546
endov
Uncharacterized protein.
  
 
 0.546
eprs1
Uncharacterized protein.
  
  
 0.537
trmu
Mitochondrial tRNA-specific 2-thiouridylase 1-like protein.
  
  
 0.526
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.