neurl2 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

neurl2

Uncharacterized protein. (267 aa)

Predicted Functional Partners:

eloc

0.660

cul5

0.650

elob

0.626

ccdc22

0.596

cand1

0.586

cand2

0.586

ENSCMIP00000033384

0.563

cish

0.518

asb13

0.479

nae1

0.456

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000033384	neurl2	ENSCMIP00000033384	ENSCMIP00000033401	Uncharacterized protein.	Uncharacterized protein.	0.563
asb13	cand1	ENSCMIP00000026127	ENSCMIP00000024355	Uncharacterized protein.	TIP120 domain-containing protein.	0.534
asb13	cand2	ENSCMIP00000026127	ENSCMIP00000049314	Uncharacterized protein.	TIP120 domain-containing protein.	0.534
asb13	ccdc22	ENSCMIP00000026127	ENSCMIP00000036310	Uncharacterized protein.	Uncharacterized protein.	0.534
asb13	cish	ENSCMIP00000026127	ENSCMIP00000044990	Uncharacterized protein.	Uncharacterized protein.	0.404
asb13	cul5	ENSCMIP00000026127	ENSCMIP00000020062	Uncharacterized protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.680
asb13	elob	ENSCMIP00000026127	ENSCMIP00000012522	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.668
asb13	eloc	ENSCMIP00000026127	ENSCMIP00000004246	Uncharacterized protein.	Skp1_POZ domain-containing protein; Belongs to the SKP1 family.	0.762
asb13	nae1	ENSCMIP00000026127	ENSCMIP00000036026	Uncharacterized protein.	NEDD8-activating enzyme E1 regulatory subunit; Regulatory subunit of the dimeric UBA3-NAE1 E1 enzyme. E1 activates NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a NEDD8-UBA3 thioester and free AMP. E1 finally transfers NEDD8 to the catalytic cysteine of UBE2M. Belongs to the ubiquitin-activating E1 family. ULA1 subfamily.	0.511
asb13	neurl2	ENSCMIP00000026127	ENSCMIP00000033401	Uncharacterized protein.	Uncharacterized protein.	0.479
cand1	asb13	ENSCMIP00000024355	ENSCMIP00000026127	TIP120 domain-containing protein.	Uncharacterized protein.	0.534
cand1	cish	ENSCMIP00000024355	ENSCMIP00000044990	TIP120 domain-containing protein.	Uncharacterized protein.	0.485
cand1	cul5	ENSCMIP00000024355	ENSCMIP00000020062	TIP120 domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.846
cand1	elob	ENSCMIP00000024355	ENSCMIP00000012522	TIP120 domain-containing protein.	Ubiquitin-like domain-containing protein.	0.744
cand1	eloc	ENSCMIP00000024355	ENSCMIP00000004246	TIP120 domain-containing protein.	Skp1_POZ domain-containing protein; Belongs to the SKP1 family.	0.782
cand1	neurl2	ENSCMIP00000024355	ENSCMIP00000033401	TIP120 domain-containing protein.	Uncharacterized protein.	0.586
cand2	asb13	ENSCMIP00000049314	ENSCMIP00000026127	TIP120 domain-containing protein.	Uncharacterized protein.	0.534
cand2	cish	ENSCMIP00000049314	ENSCMIP00000044990	TIP120 domain-containing protein.	Uncharacterized protein.	0.485
cand2	cul5	ENSCMIP00000049314	ENSCMIP00000020062	TIP120 domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.846
cand2	elob	ENSCMIP00000049314	ENSCMIP00000012522	TIP120 domain-containing protein.	Ubiquitin-like domain-containing protein.	0.744