STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ranbp3RanBD1 domain-containing protein. (556 aa)    
Predicted Functional Partners:
rcc1
Regulator of chromosome condensation.
    
 
 0.840
ENSCMIP00000038913
Nup214_FG domain-containing protein.
     
 0.800
nxt2
NTF2 domain-containing protein.
     
 0.724
LOC103172329
Nsp1_C domain-containing protein.
   
 
 0.716
rae1
WD_REPEATS_REGION domain-containing protein.
   
 
 0.710
nup50
Nuclear pore complex protein Nup50.
     
 0.688
xpo1
Exportin-1.
    
 
 0.672
LOC103186814
Importin N-terminal domain-containing protein.
    
 
 0.672
ipo5
Importin N-terminal domain-containing protein.
   
  
 0.652
xpo7
Importin N-terminal domain-containing protein.
    
 
 0.651
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.