ENSCMIP00000033564 protein (Callorhinchus milii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSCMIP00000033564

Uncharacterized protein. (136 aa)

Predicted Functional Partners:

gtf3c3

0.924

Bdp1

0.920

polr3f

0.911

polr3b

0.887

polr3a

0.882

polr1c

0.861

polr2k

0.836

polr3e

0.835

polr3h

0.831

crcp

0.822

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Bdp1	ENSCMIP00000033564	ENSCMIP00000017966	ENSCMIP00000033564	SANT domain-containing protein.	Uncharacterized protein.	0.920
Bdp1	crcp	ENSCMIP00000017966	ENSCMIP00000042913	SANT domain-containing protein.	RPOL4c domain-containing protein.	0.959
Bdp1	gtf3c3	ENSCMIP00000017966	ENSCMIP00000037926	SANT domain-containing protein.	Uncharacterized protein.	0.958
Bdp1	polr1c	ENSCMIP00000017966	ENSCMIP00000043677	SANT domain-containing protein.	DNA-directed RNA polymerases I and III subunit RPAC1.	0.924
Bdp1	polr2k	ENSCMIP00000017966	ENSCMIP00000002225	SANT domain-containing protein.	Uncharacterized protein.	0.874
Bdp1	polr3a	ENSCMIP00000017966	ENSCMIP00000011577	SANT domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.985
Bdp1	polr3b	ENSCMIP00000017966	ENSCMIP00000032437	SANT domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.973
Bdp1	polr3e	ENSCMIP00000017966	ENSCMIP00000014893	SANT domain-containing protein.	Uncharacterized protein.	0.981
Bdp1	polr3f	ENSCMIP00000017966	ENSCMIP00000015515	SANT domain-containing protein.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.988
Bdp1	polr3h	ENSCMIP00000017966	ENSCMIP00000009809	SANT domain-containing protein.	Uncharacterized protein.	0.953
ENSCMIP00000033564	Bdp1	ENSCMIP00000033564	ENSCMIP00000017966	Uncharacterized protein.	SANT domain-containing protein.	0.920
ENSCMIP00000033564	crcp	ENSCMIP00000033564	ENSCMIP00000042913	Uncharacterized protein.	RPOL4c domain-containing protein.	0.822
ENSCMIP00000033564	gtf3c3	ENSCMIP00000033564	ENSCMIP00000037926	Uncharacterized protein.	Uncharacterized protein.	0.924
ENSCMIP00000033564	polr1c	ENSCMIP00000033564	ENSCMIP00000043677	Uncharacterized protein.	DNA-directed RNA polymerases I and III subunit RPAC1.	0.861
ENSCMIP00000033564	polr2k	ENSCMIP00000033564	ENSCMIP00000002225	Uncharacterized protein.	Uncharacterized protein.	0.836
ENSCMIP00000033564	polr3a	ENSCMIP00000033564	ENSCMIP00000011577	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.882
ENSCMIP00000033564	polr3b	ENSCMIP00000033564	ENSCMIP00000032437	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.887
ENSCMIP00000033564	polr3e	ENSCMIP00000033564	ENSCMIP00000014893	Uncharacterized protein.	Uncharacterized protein.	0.835
ENSCMIP00000033564	polr3f	ENSCMIP00000033564	ENSCMIP00000015515	Uncharacterized protein.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.911
ENSCMIP00000033564	polr3h	ENSCMIP00000033564	ENSCMIP00000009809	Uncharacterized protein.	Uncharacterized protein.	0.831