STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tfdp1Transcription factor. (420 aa)    
Predicted Functional Partners:
e2f5
E2F_TDP domain-containing protein.
  
 0.977
rbl2
Uncharacterized protein.
   
 0.976
e2f4
Transcription factor E2F4-like protein.
   
 0.972
e2f3
E2F_TDP domain-containing protein.
   
 0.968
smad4
Mothers against decapentaplegic homolog.
     
 0.955
smad3
MH2 domain-containing protein.
     
 0.935
tfdp2
Uncharacterized protein.
  
  
 
0.902
e2f1
E2F_TDP domain-containing protein.
  
 0.901
rb1
Uncharacterized protein.
   
 0.880
e2f6
E2F_TDP domain-containing protein.
   
 0.865
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.