STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103191377TNFR-Cys domain-containing protein. (279 aa)    
Predicted Functional Partners:
LOC103178144
CD40 ligand-like protein; Belongs to the tumor necrosis factor family.
   
 0.991
LOC103191371
TNFR-Cys domain-containing protein.
  
  
 
0.907
traf6
TNF receptor-associated factor.
    
 0.856
traf5
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
 0.725
traf3
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
 0.725
LOC103184611
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
 0.687
traf2
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
 0.687
LOC103184612
MATH domain-containing protein.
   
 0.568
tnfaip3
Uncharacterized protein.
   
 
 0.542
hspa4
Uncharacterized protein.
    
 
 0.536
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.