entr1 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

entr1

Uncharacterized protein. (342 aa)

Predicted Functional Partners:

ccdc84

0.621

vps26a

0.560

vps29

0.553

ccp110

0.550

vps26b

0.548

vps35

0.494

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ccdc84	ccp110	ENSCMIP00000017947	ENSCMIP00000023009	Uncharacterized protein.	Uncharacterized protein.	0.550
ccdc84	entr1	ENSCMIP00000017947	ENSCMIP00000034781	Uncharacterized protein.	Uncharacterized protein.	0.621
ccp110	ccdc84	ENSCMIP00000023009	ENSCMIP00000017947	Uncharacterized protein.	Uncharacterized protein.	0.550
ccp110	entr1	ENSCMIP00000023009	ENSCMIP00000034781	Uncharacterized protein.	Uncharacterized protein.	0.550
entr1	ccdc84	ENSCMIP00000034781	ENSCMIP00000017947	Uncharacterized protein.	Uncharacterized protein.	0.621
entr1	ccp110	ENSCMIP00000034781	ENSCMIP00000023009	Uncharacterized protein.	Uncharacterized protein.	0.550
entr1	vps26a	ENSCMIP00000034781	ENSCMIP00000045375	Uncharacterized protein.	Vacuolar protein sorting-associated protein 26A-like protein.	0.560
entr1	vps26b	ENSCMIP00000034781	ENSCMIP00000012978	Uncharacterized protein.	Uncharacterized protein.	0.548
entr1	vps29	ENSCMIP00000034781	ENSCMIP00000014288	Uncharacterized protein.	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	0.553
entr1	vps35	ENSCMIP00000034781	ENSCMIP00000037671	Uncharacterized protein.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.494
vps26a	entr1	ENSCMIP00000045375	ENSCMIP00000034781	Vacuolar protein sorting-associated protein 26A-like protein.	Uncharacterized protein.	0.560
vps26a	vps26b	ENSCMIP00000045375	ENSCMIP00000012978	Vacuolar protein sorting-associated protein 26A-like protein.	Uncharacterized protein.	0.969
vps26a	vps29	ENSCMIP00000045375	ENSCMIP00000014288	Vacuolar protein sorting-associated protein 26A-like protein.	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	0.997
vps26a	vps35	ENSCMIP00000045375	ENSCMIP00000037671	Vacuolar protein sorting-associated protein 26A-like protein.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.998
vps26b	entr1	ENSCMIP00000012978	ENSCMIP00000034781	Uncharacterized protein.	Uncharacterized protein.	0.548
vps26b	vps26a	ENSCMIP00000012978	ENSCMIP00000045375	Uncharacterized protein.	Vacuolar protein sorting-associated protein 26A-like protein.	0.969
vps26b	vps29	ENSCMIP00000012978	ENSCMIP00000014288	Uncharacterized protein.	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	0.980
vps26b	vps35	ENSCMIP00000012978	ENSCMIP00000037671	Uncharacterized protein.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.988
vps29	entr1	ENSCMIP00000014288	ENSCMIP00000034781	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	Uncharacterized protein.	0.553
vps29	vps26a	ENSCMIP00000014288	ENSCMIP00000045375	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	Vacuolar protein sorting-associated protein 26A-like protein.	0.997