STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rtf2Rtf2 domain-containing protein. (300 aa)    
Predicted Functional Partners:
zfand4
Uncharacterized protein.
      
 0.549
pkdrej
Uncharacterized protein.
   
  
 0.469
ccdc130
Coiled-coil domain-containing protein 130-like protein.
      
 0.465
trmt1
Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Trm1 family.
    
   0.451
rtf1
Plus3 domain-containing protein.
   
  
 0.446
smu1
Uncharacterized protein.
      
 0.426
spaca9
Uncharacterized protein.
      
 0.422
rbm25
Uncharacterized protein.
      
 0.412
spata16
Uncharacterized protein.
      
 0.408
ubxn7
UBX domain-containing protein 7.
      
 0.408
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.