vps35 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

vps35

Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting. (796 aa)

Predicted Functional Partners:

vps29

0.999

vps26a

0.998

vps26b

0.988

snx3

0.969

snx12

0.969

snx1

0.955

snx2

0.955

snx10

0.894

snx11

0.894

dnajc6

0.853

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
dnajc6	snx1	ENSCMIP00000036602	ENSCMIP00000023551	Uncharacterized protein.	PX domain-containing protein.	0.652
dnajc6	snx2	ENSCMIP00000036602	ENSCMIP00000027911	Uncharacterized protein.	PX domain-containing protein.	0.652
dnajc6	vps35	ENSCMIP00000036602	ENSCMIP00000037671	Uncharacterized protein.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.853
snx1	dnajc6	ENSCMIP00000023551	ENSCMIP00000036602	PX domain-containing protein.	Uncharacterized protein.	0.652
snx1	snx12	ENSCMIP00000023551	ENSCMIP00000040810	PX domain-containing protein.	PX domain-containing protein.	0.424
snx1	snx3	ENSCMIP00000023551	ENSCMIP00000035735	PX domain-containing protein.	PX domain-containing protein.	0.424
snx1	vps26a	ENSCMIP00000023551	ENSCMIP00000045375	PX domain-containing protein.	Vacuolar protein sorting-associated protein 26A-like protein.	0.805
snx1	vps26b	ENSCMIP00000023551	ENSCMIP00000012978	PX domain-containing protein.	Uncharacterized protein.	0.790
snx1	vps29	ENSCMIP00000023551	ENSCMIP00000014288	PX domain-containing protein.	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	0.953
snx1	vps35	ENSCMIP00000023551	ENSCMIP00000037671	PX domain-containing protein.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.955
snx10	vps26a	ENSCMIP00000013676	ENSCMIP00000045375	PX domain-containing protein.	Vacuolar protein sorting-associated protein 26A-like protein.	0.801
snx10	vps26b	ENSCMIP00000013676	ENSCMIP00000012978	PX domain-containing protein.	Uncharacterized protein.	0.801
snx10	vps29	ENSCMIP00000013676	ENSCMIP00000014288	PX domain-containing protein.	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	0.745
snx10	vps35	ENSCMIP00000013676	ENSCMIP00000037671	PX domain-containing protein.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.894
snx11	vps26a	ENSCMIP00000037707	ENSCMIP00000045375	PX domain-containing protein.	Vacuolar protein sorting-associated protein 26A-like protein.	0.801
snx11	vps26b	ENSCMIP00000037707	ENSCMIP00000012978	PX domain-containing protein.	Uncharacterized protein.	0.801
snx11	vps29	ENSCMIP00000037707	ENSCMIP00000014288	PX domain-containing protein.	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	0.745
snx11	vps35	ENSCMIP00000037707	ENSCMIP00000037671	PX domain-containing protein.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.894
snx12	snx1	ENSCMIP00000040810	ENSCMIP00000023551	PX domain-containing protein.	PX domain-containing protein.	0.424
snx12	snx2	ENSCMIP00000040810	ENSCMIP00000027911	PX domain-containing protein.	PX domain-containing protein.	0.424