STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bdnfBrain-derived neurotrophic factor; Promotes the survival of neuronal populations that are all located either in the central nervous system or directly connected to it; Belongs to the NGF-beta family. (260 aa)    
Predicted Functional Partners:
ntf4
Neurotrophin-4a.
  
 
0.964
ntf3
Neurotrophin-3; Seems to promote the survival of visceral and proprioceptive sensory neurons; Belongs to the NGF-beta family.
  
 
0.955
LOC103173289
Uncharacterized protein.
    
 0.898
ntrk3
Tyrosine-protein kinase receptor.
   
 0.826
ntrk2
Tyrosine-protein kinase receptor.
   
 0.826
igf1r
Tyrosine-protein kinase receptor.
    
 0.751
Gdnf
TGF_BETA_2 domain-containing protein.
      
 0.735
sort1
Sortilin.
    
 
 0.735
LOC103179426
Sortilin.
    
 
 0.735
mecp2
MBD domain-containing protein.
    
 0.732
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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