STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pla2g3PA2c domain-containing protein. (546 aa)    
Predicted Functional Partners:
LOC103190668
Phospholipase A(2).
     
 0.674
fau
Ubiquitin-like domain-containing protein.
    
  0.581
pla2g12a
Uncharacterized protein.
     
 0.537
rpl21
60S ribosomal protein L21.
   
   0.510
rpl13a
Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.
   
   0.494
LOC103188674
Phospholipase A(2).
     
 0.490
LOC103189864
Phospholipase A(2).
     
 0.490
ENSCMIP00000029257
Uncharacterized protein.
     
 0.490
mrpl2
Ribosomal_L2_C domain-containing protein.
   
 
 0.473
rag2
RAG2_PHD domain-containing protein.
   
 0.472
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.