STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vgfUncharacterized protein. (525 aa)    
Predicted Functional Partners:
gak
Uncharacterized protein.
   
 
 0.960
LOC103191386
AP-1 complex subunit gamma.
    
 0.804
ap1g1
AP-1 complex subunit gamma.
    
 0.804
ap1b1
Uncharacterized protein.
    
 0.796
ap2b1
AP complex subunit beta.
    
 0.796
ap4e1
AP-4 complex subunit epsilon; AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system; Belongs to the adaptor complexes large subunit family.
    
 0.783
ap4b1
AP complex subunit beta; Belongs to the adaptor complexes large subunit family.
    
 0.780
ENSCMIP00000002072
Uncharacterized protein.
    
 0.741
LOC103174622
MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.
    
 0.741
ENSCMIP00000020775
MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.
    
 0.741
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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