ik protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ik

Protein Red-like protein. (554 aa)

Predicted Functional Partners:

smu1

0.997

prpf6

0.957

mfap1

0.948

wdr55

0.899

prpf38a

0.894

eftud2

0.874

wbp4

0.816

txnl4a

0.812

zmat2

0.812

sf3b3

0.793

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
eftud2	ik	ENSCMIP00000019319	ENSCMIP00000040828	Tr-type G domain-containing protein.	Protein Red-like protein.	0.874
eftud2	mfap1	ENSCMIP00000019319	ENSCMIP00000022162	Tr-type G domain-containing protein.	Microfibrillar-associated protein 1-like protein.	0.983
eftud2	prpf38a	ENSCMIP00000019319	ENSCMIP00000024875	Tr-type G domain-containing protein.	Pre-mRNA-splicing factor 38A-like protein.	0.661
eftud2	prpf6	ENSCMIP00000019319	ENSCMIP00000028890	Tr-type G domain-containing protein.	Uncharacterized protein.	0.999
eftud2	sf3b3	ENSCMIP00000019319	ENSCMIP00000031331	Tr-type G domain-containing protein.	CPSF_A domain-containing protein.	0.982
eftud2	smu1	ENSCMIP00000019319	ENSCMIP00000026263	Tr-type G domain-containing protein.	Uncharacterized protein.	0.694
eftud2	txnl4a	ENSCMIP00000019319	ENSCMIP00000036132	Tr-type G domain-containing protein.	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.	0.995
eftud2	wbp4	ENSCMIP00000019319	ENSCMIP00000011455	Tr-type G domain-containing protein.	Uncharacterized protein.	0.566
eftud2	zmat2	ENSCMIP00000019319	ENSCMIP00000041211	Tr-type G domain-containing protein.	U1-type domain-containing protein.	0.942
ik	eftud2	ENSCMIP00000040828	ENSCMIP00000019319	Protein Red-like protein.	Tr-type G domain-containing protein.	0.874
ik	mfap1	ENSCMIP00000040828	ENSCMIP00000022162	Protein Red-like protein.	Microfibrillar-associated protein 1-like protein.	0.948
ik	prpf38a	ENSCMIP00000040828	ENSCMIP00000024875	Protein Red-like protein.	Pre-mRNA-splicing factor 38A-like protein.	0.894
ik	prpf6	ENSCMIP00000040828	ENSCMIP00000028890	Protein Red-like protein.	Uncharacterized protein.	0.957
ik	sf3b3	ENSCMIP00000040828	ENSCMIP00000031331	Protein Red-like protein.	CPSF_A domain-containing protein.	0.793
ik	smu1	ENSCMIP00000040828	ENSCMIP00000026263	Protein Red-like protein.	Uncharacterized protein.	0.997
ik	txnl4a	ENSCMIP00000040828	ENSCMIP00000036132	Protein Red-like protein.	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.	0.812
ik	wbp4	ENSCMIP00000040828	ENSCMIP00000011455	Protein Red-like protein.	Uncharacterized protein.	0.816
ik	wdr55	ENSCMIP00000040828	ENSCMIP00000042794	Protein Red-like protein.	WD repeat-containing protein 55; Nucleolar protein that acts as a modulator of rRNA synthesis. Plays a central role during organogenesis. Belongs to the WD repeat WDR55 family.	0.899
ik	zmat2	ENSCMIP00000040828	ENSCMIP00000041211	Protein Red-like protein.	U1-type domain-containing protein.	0.812
mfap1	eftud2	ENSCMIP00000022162	ENSCMIP00000019319	Microfibrillar-associated protein 1-like protein.	Tr-type G domain-containing protein.	0.983