STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zmat2U1-type domain-containing protein. (203 aa)    
Predicted Functional Partners:
mfap1
Microfibrillar-associated protein 1-like protein.
   
 0.998
snrnp200
Uncharacterized protein.
   
 
 0.993
prpf6
Uncharacterized protein.
   
 0.985
prpf38a
Pre-mRNA-splicing factor 38A-like protein.
   
 0.983
sf3a2
Matrin-type domain-containing protein.
   
 
 0.959
lsm7
Sm domain-containing protein.
   
 0.953
snu13
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
    
 0.950
lsm5
U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.
    
 0.948
ENSCMIP00000000591
PRP3 domain-containing protein.
   
 0.943
lsm6
U6 snRNA-associated Sm-like protein LSm6.
   
 0.942
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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