ENSCMIP00000041613 protein (Callorhinchus milii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSCMIP00000041613

ATPase_AAA_core domain-containing protein. (98 aa)

Predicted Functional Partners:

ubxn7

0.944

mtrex

0.774

rbm28

0.749

ufd1

0.721

nom1

0.677

noc3l

0.677

rpf2

0.673

wdr74

0.671

LOC103181485

0.657

gtpbp4

0.654

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000041613	LOC103181485	ENSCMIP00000041613	ENSCMIP00000027175	ATPase_AAA_core domain-containing protein.	Charged multivesicular body protein 3-like protein.	0.657
ENSCMIP00000041613	gtpbp4	ENSCMIP00000041613	ENSCMIP00000004703	ATPase_AAA_core domain-containing protein.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.654
ENSCMIP00000041613	mtrex	ENSCMIP00000041613	ENSCMIP00000048124	ATPase_AAA_core domain-containing protein.	Uncharacterized protein.	0.774
ENSCMIP00000041613	noc3l	ENSCMIP00000041613	ENSCMIP00000045072	ATPase_AAA_core domain-containing protein.	Nucleolar complex protein 3 homolog.	0.677
ENSCMIP00000041613	nom1	ENSCMIP00000041613	ENSCMIP00000021370	ATPase_AAA_core domain-containing protein.	MI domain-containing protein.	0.677
ENSCMIP00000041613	rbm28	ENSCMIP00000041613	ENSCMIP00000007536	ATPase_AAA_core domain-containing protein.	RRM domain-containing protein.	0.749
ENSCMIP00000041613	rpf2	ENSCMIP00000041613	ENSCMIP00000037321	ATPase_AAA_core domain-containing protein.	Brix domain-containing protein.	0.673
ENSCMIP00000041613	ubxn7	ENSCMIP00000041613	ENSCMIP00000032616	ATPase_AAA_core domain-containing protein.	UBX domain-containing protein 7.	0.944
ENSCMIP00000041613	ufd1	ENSCMIP00000041613	ENSCMIP00000033040	ATPase_AAA_core domain-containing protein.	Ubiquitin fusion degradation protein 1-like protein.	0.721
ENSCMIP00000041613	wdr74	ENSCMIP00000041613	ENSCMIP00000008169	ATPase_AAA_core domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.671
LOC103181485	ENSCMIP00000041613	ENSCMIP00000027175	ENSCMIP00000041613	Charged multivesicular body protein 3-like protein.	ATPase_AAA_core domain-containing protein.	0.657
gtpbp4	ENSCMIP00000041613	ENSCMIP00000004703	ENSCMIP00000041613	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	ATPase_AAA_core domain-containing protein.	0.654
gtpbp4	mtrex	ENSCMIP00000004703	ENSCMIP00000048124	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	Uncharacterized protein.	0.920
gtpbp4	noc3l	ENSCMIP00000004703	ENSCMIP00000045072	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	Nucleolar complex protein 3 homolog.	0.992
gtpbp4	nom1	ENSCMIP00000004703	ENSCMIP00000021370	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	MI domain-containing protein.	0.400
gtpbp4	rbm28	ENSCMIP00000004703	ENSCMIP00000007536	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	RRM domain-containing protein.	0.966
gtpbp4	rpf2	ENSCMIP00000004703	ENSCMIP00000037321	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	Brix domain-containing protein.	0.997
gtpbp4	wdr74	ENSCMIP00000004703	ENSCMIP00000008169	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	WD_REPEATS_REGION domain-containing protein.	0.990
mtrex	ENSCMIP00000041613	ENSCMIP00000048124	ENSCMIP00000041613	Uncharacterized protein.	ATPase_AAA_core domain-containing protein.	0.774
mtrex	gtpbp4	ENSCMIP00000048124	ENSCMIP00000004703	Uncharacterized protein.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.920