STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sdc3Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family. (70 aa)    
Predicted Functional Partners:
sdc1
4.1m domain-containing protein.
  
0.969
sdc2
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
  
  
0.934
Sdc4
Uncharacterized protein.
     
  0.900
dcn
Decorin; May affect the rate of fibrils formation.
     
 0.668
vcan
Uncharacterized protein.
     
 0.606
ext2
Uncharacterized protein; Belongs to the glycosyltransferase 47 family.
     
 0.579
hs2st1
Uncharacterized protein.
     
 0.557
Gdnf
TGF_BETA_2 domain-containing protein.
      
 0.553
ncan
Uncharacterized protein.
     
 0.547
LOC103173682
LAM_G_DOMAIN domain-containing protein.
     
 0.544
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.