rps10 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

rps10

S10_plectin domain-containing protein. (198 aa)

Predicted Functional Partners:

rpsa

0.999

ENSCMIP00000002214

0.999

rps26

0.999

Rpl36al

0.999

rpl30

0.999

fau

0.999

rps4x

0.999

rps27a

0.999

rpl7a

0.999

imp3

0.999

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000002214	Rpl36al	ENSCMIP00000002214	ENSCMIP00000004264	Ribosomal_L16 domain-containing protein.	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL42 family.	0.999
ENSCMIP00000002214	fau	ENSCMIP00000002214	ENSCMIP00000005942	Ribosomal_L16 domain-containing protein.	Ubiquitin-like domain-containing protein.	0.999
ENSCMIP00000002214	imp3	ENSCMIP00000002214	ENSCMIP00000008514	Ribosomal_L16 domain-containing protein.	IMP3, U3 small nucleolar ribonucleoprotein-like protein.	0.935
ENSCMIP00000002214	rpl30	ENSCMIP00000002214	ENSCMIP00000004616	Ribosomal_L16 domain-containing protein.	Ribosomal_L7Ae domain-containing protein.	0.999
ENSCMIP00000002214	rpl7a	ENSCMIP00000002214	ENSCMIP00000006895	Ribosomal_L16 domain-containing protein.	Ribosomal_L7Ae domain-containing protein.	0.999
ENSCMIP00000002214	rps10	ENSCMIP00000002214	ENSCMIP00000042220	Ribosomal_L16 domain-containing protein.	S10_plectin domain-containing protein.	0.999
ENSCMIP00000002214	rps26	ENSCMIP00000002214	ENSCMIP00000003330	Ribosomal_L16 domain-containing protein.	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.	0.999
ENSCMIP00000002214	rps27a	ENSCMIP00000002214	ENSCMIP00000006356	Ribosomal_L16 domain-containing protein.	Ubiquitin-like domain-containing protein.	0.999
ENSCMIP00000002214	rps4x	ENSCMIP00000002214	ENSCMIP00000006333	Ribosomal_L16 domain-containing protein.	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	0.999
ENSCMIP00000002214	rpsa	ENSCMIP00000002214	ENSCMIP00000000448	Ribosomal_L16 domain-containing protein.	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits; Belongs to the universal ribosomal protein uS2 family.	0.999
Rpl36al	ENSCMIP00000002214	ENSCMIP00000004264	ENSCMIP00000002214	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL42 family.	Ribosomal_L16 domain-containing protein.	0.999
Rpl36al	fau	ENSCMIP00000004264	ENSCMIP00000005942	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL42 family.	Ubiquitin-like domain-containing protein.	0.999
Rpl36al	imp3	ENSCMIP00000004264	ENSCMIP00000008514	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL42 family.	IMP3, U3 small nucleolar ribonucleoprotein-like protein.	0.999
Rpl36al	rpl30	ENSCMIP00000004264	ENSCMIP00000004616	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL42 family.	Ribosomal_L7Ae domain-containing protein.	0.999
Rpl36al	rpl7a	ENSCMIP00000004264	ENSCMIP00000006895	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL42 family.	Ribosomal_L7Ae domain-containing protein.	0.999
Rpl36al	rps10	ENSCMIP00000004264	ENSCMIP00000042220	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL42 family.	S10_plectin domain-containing protein.	0.999
Rpl36al	rps26	ENSCMIP00000004264	ENSCMIP00000003330	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL42 family.	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.	0.999
Rpl36al	rps27a	ENSCMIP00000004264	ENSCMIP00000006356	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL42 family.	Ubiquitin-like domain-containing protein.	0.999
Rpl36al	rps4x	ENSCMIP00000004264	ENSCMIP00000006333	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL42 family.	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	0.999
Rpl36al	rpsa	ENSCMIP00000004264	ENSCMIP00000000448	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL42 family.	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits; Belongs to the universal ribosomal protein uS2 family.	0.998