STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
apobec2Putative C-to-U-editing enzyme APOBEC-2. (231 aa)    
Predicted Functional Partners:
apobec4
Uncharacterized protein.
     
 0.918
a1cf
APOBEC1 complementation factor.
     
 0.827
apob
Vitellogenin domain-containing protein.
      
 0.746
rbm47
Uncharacterized protein.
     
 0.734
adat2
CMP/dCMP-type deaminase domain-containing protein.
      
 0.693
adat1
A to I editase domain-containing protein.
      
 0.601
asmtl
Uncharacterized protein.
      
 0.553
srp19
Uncharacterized protein.
      
 0.553
ENSCMIP00000004961
Uncharacterized protein.
     
0.538
tdg
UDG domain-containing protein.
      
 0.508
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.