STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103189250ANK_REP_REGION domain-containing protein. (1092 aa)    
Predicted Functional Partners:
casp9
Uncharacterized protein; Belongs to the peptidase C14A family.
    
 0.584
vcp
Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.
    
 0.560
apaf1
Uncharacterized protein.
    
 0.538
vangl1
Vang-like protein.
    
 0.516
mtr
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 
  0.507
rhoj
Uncharacterized protein.
    
  0.499
rhoq
Uncharacterized protein.
    
  0.499
rhoh
Rho-related GTP-binding protein RhoH-like protein.
    
  0.499
LOC103183945
Uncharacterized protein.
  
     0.498
ldlrad1
Uncharacterized protein.
    
  0.492
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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