tmem38a protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

tmem38a

Trimeric intracellular cation channel type A. (300 aa)

Predicted Functional Partners:

tmem161a

0.612

rhbdd1

0.553

Smim7

0.552

ENSCMIP00000006559

0.543

lrrc20

0.466

Tmem70

0.451

LOC103188692

0.447

klhl31

0.447

ENSCMIP00000045981

0.442

Tmem171

0.440

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000006559	tmem38a	ENSCMIP00000006559	ENSCMIP00000043992	Uncharacterized protein.	Trimeric intracellular cation channel type A.	0.543
ENSCMIP00000045981	tmem38a	ENSCMIP00000045981	ENSCMIP00000043992	Uncharacterized protein.	Trimeric intracellular cation channel type A.	0.442
LOC103188692	Tmem70	ENSCMIP00000014095	ENSCMIP00000004256	BTB domain-containing protein.	Uncharacterized protein.	0.443
LOC103188692	rhbdd1	ENSCMIP00000014095	ENSCMIP00000018735	BTB domain-containing protein.	Rhomboid domain-containing protein.	0.459
LOC103188692	tmem161a	ENSCMIP00000014095	ENSCMIP00000009713	BTB domain-containing protein.	Uncharacterized protein.	0.481
LOC103188692	tmem38a	ENSCMIP00000014095	ENSCMIP00000043992	BTB domain-containing protein.	Trimeric intracellular cation channel type A.	0.447
Smim7	tmem38a	ENSCMIP00000043995	ENSCMIP00000043992	Uncharacterized protein.	Trimeric intracellular cation channel type A.	0.552
Tmem171	tmem38a	ENSCMIP00000018407	ENSCMIP00000043992	Uncharacterized protein.	Trimeric intracellular cation channel type A.	0.440
Tmem70	LOC103188692	ENSCMIP00000004256	ENSCMIP00000014095	Uncharacterized protein.	BTB domain-containing protein.	0.443
Tmem70	klhl31	ENSCMIP00000004256	ENSCMIP00000039698	Uncharacterized protein.	BTB domain-containing protein.	0.443
Tmem70	rhbdd1	ENSCMIP00000004256	ENSCMIP00000018735	Uncharacterized protein.	Rhomboid domain-containing protein.	0.553
Tmem70	tmem38a	ENSCMIP00000004256	ENSCMIP00000043992	Uncharacterized protein.	Trimeric intracellular cation channel type A.	0.451
klhl31	Tmem70	ENSCMIP00000039698	ENSCMIP00000004256	BTB domain-containing protein.	Uncharacterized protein.	0.443
klhl31	rhbdd1	ENSCMIP00000039698	ENSCMIP00000018735	BTB domain-containing protein.	Rhomboid domain-containing protein.	0.459
klhl31	tmem161a	ENSCMIP00000039698	ENSCMIP00000009713	BTB domain-containing protein.	Uncharacterized protein.	0.481
klhl31	tmem38a	ENSCMIP00000039698	ENSCMIP00000043992	BTB domain-containing protein.	Trimeric intracellular cation channel type A.	0.447
lrrc20	tmem38a	ENSCMIP00000021057	ENSCMIP00000043992	Leucine-rich repeat-containing protein 20.	Trimeric intracellular cation channel type A.	0.466
rhbdd1	LOC103188692	ENSCMIP00000018735	ENSCMIP00000014095	Rhomboid domain-containing protein.	BTB domain-containing protein.	0.459
rhbdd1	Tmem70	ENSCMIP00000018735	ENSCMIP00000004256	Rhomboid domain-containing protein.	Uncharacterized protein.	0.553
rhbdd1	klhl31	ENSCMIP00000018735	ENSCMIP00000039698	Rhomboid domain-containing protein.	BTB domain-containing protein.	0.459