STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbbp9Uncharacterized protein. (193 aa)    
Predicted Functional Partners:
kat14
N-acetyltransferase domain-containing protein.
      
 0.591
yrdc
YrdC-like domain-containing protein.
    
 
 0.566
ppme1
Protein phosphatase methylesterase 1; Demethylates proteins that have been reversibly carboxymethylated.
   
  
 0.554
dzank1
ANK_REP_REGION domain-containing protein.
 
    
 0.482
Pou2af1
ANK_REP_REGION domain-containing protein.
      
 0.457
LOC103179323
YrdC-like domain-containing protein.
    
 
 0.423
fancc
Fanconi anemia group C protein-like protein.
      
 0.418
mfhas1
Malignant fibrous histiocytoma-amplified sequence 1-like protein.
      
 0.410
polr3f
DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.
      
 0.407
LOC103179261
Microtubule-associated proteins 1A/1B light chain 3C-like protein.
      
 0.402
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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