snapc5 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

snapc5

Uncharacterized protein. (113 aa)

Predicted Functional Partners:

snapc1

0.988

snapc3

0.942

gtf2b

0.916

Snapc4

0.893

ENSCMIP00000034765

0.893

ENSCMIP00000034773

0.893

gtf2a2

0.804

gtf2a1

0.804

LOC103180788

0.700

LOC103178499

0.666

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000034765	LOC103178499	ENSCMIP00000034765	ENSCMIP00000000381	HTH myb-type domain-containing protein.	Uncharacterized protein.	0.672
ENSCMIP00000034765	LOC103180788	ENSCMIP00000034765	ENSCMIP00000005353	HTH myb-type domain-containing protein.	Uncharacterized protein.	0.677
ENSCMIP00000034765	gtf2a1	ENSCMIP00000034765	ENSCMIP00000039361	HTH myb-type domain-containing protein.	Uncharacterized protein.	0.745
ENSCMIP00000034765	gtf2a2	ENSCMIP00000034765	ENSCMIP00000011829	HTH myb-type domain-containing protein.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.769
ENSCMIP00000034765	gtf2b	ENSCMIP00000034765	ENSCMIP00000016617	HTH myb-type domain-containing protein.	TFIIB-type domain-containing protein.	0.723
ENSCMIP00000034765	snapc1	ENSCMIP00000034765	ENSCMIP00000007052	HTH myb-type domain-containing protein.	Uncharacterized protein.	0.927
ENSCMIP00000034765	snapc3	ENSCMIP00000034765	ENSCMIP00000041734	HTH myb-type domain-containing protein.	snRNA-activating protein complex subunit 3.	0.919
ENSCMIP00000034765	snapc5	ENSCMIP00000034765	ENSCMIP00000044678	HTH myb-type domain-containing protein.	Uncharacterized protein.	0.893
ENSCMIP00000034773	LOC103178499	ENSCMIP00000034773	ENSCMIP00000000381	Uncharacterized protein.	Uncharacterized protein.	0.672
ENSCMIP00000034773	LOC103180788	ENSCMIP00000034773	ENSCMIP00000005353	Uncharacterized protein.	Uncharacterized protein.	0.677
ENSCMIP00000034773	gtf2a1	ENSCMIP00000034773	ENSCMIP00000039361	Uncharacterized protein.	Uncharacterized protein.	0.745
ENSCMIP00000034773	gtf2a2	ENSCMIP00000034773	ENSCMIP00000011829	Uncharacterized protein.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.769
ENSCMIP00000034773	gtf2b	ENSCMIP00000034773	ENSCMIP00000016617	Uncharacterized protein.	TFIIB-type domain-containing protein.	0.723
ENSCMIP00000034773	snapc1	ENSCMIP00000034773	ENSCMIP00000007052	Uncharacterized protein.	Uncharacterized protein.	0.927
ENSCMIP00000034773	snapc3	ENSCMIP00000034773	ENSCMIP00000041734	Uncharacterized protein.	snRNA-activating protein complex subunit 3.	0.919
ENSCMIP00000034773	snapc5	ENSCMIP00000034773	ENSCMIP00000044678	Uncharacterized protein.	Uncharacterized protein.	0.893
LOC103178499	ENSCMIP00000034765	ENSCMIP00000000381	ENSCMIP00000034765	Uncharacterized protein.	HTH myb-type domain-containing protein.	0.672
LOC103178499	ENSCMIP00000034773	ENSCMIP00000000381	ENSCMIP00000034773	Uncharacterized protein.	Uncharacterized protein.	0.672
LOC103178499	LOC103180788	ENSCMIP00000000381	ENSCMIP00000005353	Uncharacterized protein.	Uncharacterized protein.	0.842
LOC103178499	Snapc4	ENSCMIP00000000381	ENSCMIP00000034758	Uncharacterized protein.	Uncharacterized protein.	0.672