ccar1 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ccar1

SAP domain-containing protein. (1122 aa)

Predicted Functional Partners:

prpf40a

0.810

u2surp

0.676

tcerg1l

0.626

tcerg1

0.626

ca7

0.615

rbm25

0.598

rbm39

0.592

rbm5

0.592

sirt1

0.589

sirt5

0.589

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ca7	ccar1	ENSCMIP00000036067	ENSCMIP00000045325	Carbonic anhydrase 7-like protein; Belongs to the alpha-carbonic anhydrase family.	SAP domain-containing protein.	0.615
ccar1	ca7	ENSCMIP00000045325	ENSCMIP00000036067	SAP domain-containing protein.	Carbonic anhydrase 7-like protein; Belongs to the alpha-carbonic anhydrase family.	0.615
ccar1	prpf40a	ENSCMIP00000045325	ENSCMIP00000021508	SAP domain-containing protein.	Uncharacterized protein.	0.810
ccar1	rbm25	ENSCMIP00000045325	ENSCMIP00000044527	SAP domain-containing protein.	Uncharacterized protein.	0.598
ccar1	rbm39	ENSCMIP00000045325	ENSCMIP00000006327	SAP domain-containing protein.	Uncharacterized protein.	0.592
ccar1	rbm5	ENSCMIP00000045325	ENSCMIP00000043173	SAP domain-containing protein.	Uncharacterized protein.	0.592
ccar1	sirt1	ENSCMIP00000045325	ENSCMIP00000001044	SAP domain-containing protein.	Deacetylase sirtuin-type domain-containing protein.	0.589
ccar1	sirt5	ENSCMIP00000045325	ENSCMIP00000003322	SAP domain-containing protein.	NAD-dependent protein deacylase sirtuin-5, mitochondrial; NAD-dependent lysine demalonylase, desuccinylase and deglutarylase that specifically removes malonyl, succinyl and glutaryl groups on target proteins. Has weak NAD-dependent protein deacetylase activity; however this activity may not be physiologically relevant in vivo.	0.589
ccar1	tcerg1	ENSCMIP00000045325	ENSCMIP00000048148	SAP domain-containing protein.	Uncharacterized protein.	0.626
ccar1	tcerg1l	ENSCMIP00000045325	ENSCMIP00000041897	SAP domain-containing protein.	Uncharacterized protein.	0.626
ccar1	u2surp	ENSCMIP00000045325	ENSCMIP00000013699	SAP domain-containing protein.	Uncharacterized protein.	0.676
prpf40a	ccar1	ENSCMIP00000021508	ENSCMIP00000045325	Uncharacterized protein.	SAP domain-containing protein.	0.810
prpf40a	rbm25	ENSCMIP00000021508	ENSCMIP00000044527	Uncharacterized protein.	Uncharacterized protein.	0.943
prpf40a	rbm39	ENSCMIP00000021508	ENSCMIP00000006327	Uncharacterized protein.	Uncharacterized protein.	0.797
prpf40a	rbm5	ENSCMIP00000021508	ENSCMIP00000043173	Uncharacterized protein.	Uncharacterized protein.	0.589
prpf40a	tcerg1	ENSCMIP00000021508	ENSCMIP00000048148	Uncharacterized protein.	Uncharacterized protein.	0.666
prpf40a	tcerg1l	ENSCMIP00000021508	ENSCMIP00000041897	Uncharacterized protein.	Uncharacterized protein.	0.666
prpf40a	u2surp	ENSCMIP00000021508	ENSCMIP00000013699	Uncharacterized protein.	Uncharacterized protein.	0.731
rbm25	ccar1	ENSCMIP00000044527	ENSCMIP00000045325	Uncharacterized protein.	SAP domain-containing protein.	0.598
rbm25	prpf40a	ENSCMIP00000044527	ENSCMIP00000021508	Uncharacterized protein.	Uncharacterized protein.	0.943