STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
faf2UBX domain-containing protein. (447 aa)    
Predicted Functional Partners:
vcp
Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.
   
 0.979
ufd1
Ubiquitin fusion degradation protein 1-like protein.
    
 
 0.965
ubxn7
UBX domain-containing protein 7.
    
 
 0.964
ubac2
UBA domain-containing protein.
    
 
 0.963
ubxn1
UBX domain-containing protein.
   
 
 0.952
ENSCMIP00000004064
Ubiquitin-like domain-containing protein.
    
 
 0.924
derl2
Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.
    
 
 0.821
plaa
Uncharacterized protein.
   
 
 0.778
sel1l
Fibronectin type-II domain-containing protein.
   
 
 0.766
nploc4
MPN domain-containing protein.
    
 
 0.752
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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