gpr22 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

gpr22

G_PROTEIN_RECEP_F1_2 domain-containing protein. (440 aa)

Predicted Functional Partners:

slc1a3

0.663

gpr20

0.644

gart

0.591

dus4l

0.553

gpr142

0.550

cog5

0.497

aldh1a3

0.493

ptger1

0.468

Gpr87

0.460

ccdc174

0.450

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Gpr87	gpr22	ENSCMIP00000024469	ENSCMIP00000048946	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.460
aldh1a3	gart	ENSCMIP00000010742	ENSCMIP00000039298	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.	0.740
aldh1a3	gpr22	ENSCMIP00000010742	ENSCMIP00000048946	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.493
ccdc174	gpr22	ENSCMIP00000049318	ENSCMIP00000048946	Uncharacterized protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.450
cog5	dus4l	ENSCMIP00000019615	ENSCMIP00000008746	Uncharacterized protein.	tRNA-dihydrouridine synthase; Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs; Belongs to the dus family.	0.563
cog5	gpr22	ENSCMIP00000019615	ENSCMIP00000048946	Uncharacterized protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.497
dus4l	cog5	ENSCMIP00000008746	ENSCMIP00000019615	tRNA-dihydrouridine synthase; Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs; Belongs to the dus family.	Uncharacterized protein.	0.563
dus4l	gpr22	ENSCMIP00000008746	ENSCMIP00000048946	tRNA-dihydrouridine synthase; Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs; Belongs to the dus family.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.553
gart	aldh1a3	ENSCMIP00000039298	ENSCMIP00000010742	Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.740
gart	gpr22	ENSCMIP00000039298	ENSCMIP00000048946	Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.591
gart	slc1a3	ENSCMIP00000039298	ENSCMIP00000010763	Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.	Amino acid transporter.	0.549
gpr142	gpr22	ENSCMIP00000047821	ENSCMIP00000048946	G_PROTEIN_RECEP_F1_2 domain-containing protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.550
gpr142	ptger1	ENSCMIP00000047821	ENSCMIP00000041275	G_PROTEIN_RECEP_F1_2 domain-containing protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	0.408
gpr20	gpr22	ENSCMIP00000000889	ENSCMIP00000048946	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.644
gpr22	Gpr87	ENSCMIP00000048946	ENSCMIP00000024469	G_PROTEIN_RECEP_F1_2 domain-containing protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	0.460
gpr22	aldh1a3	ENSCMIP00000048946	ENSCMIP00000010742	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.493
gpr22	ccdc174	ENSCMIP00000048946	ENSCMIP00000049318	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Uncharacterized protein.	0.450
gpr22	cog5	ENSCMIP00000048946	ENSCMIP00000019615	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Uncharacterized protein.	0.497
gpr22	dus4l	ENSCMIP00000048946	ENSCMIP00000008746	G_PROTEIN_RECEP_F1_2 domain-containing protein.	tRNA-dihydrouridine synthase; Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs; Belongs to the dus family.	0.553
gpr22	gart	ENSCMIP00000048946	ENSCMIP00000039298	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.	0.591