A0A4P9XJI3 protein (Thamnocephalis sphaerospora)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A4P9XJI3

40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (194 aa)

Predicted Functional Partners:

A0A4P9XG56

0.999

A0A4P9XGW7

0.999

A0A4P9XGX7

0.999

A0A4P9XH99

0.999

A0A4P9XHB5

0.999

A0A4P9XHC9

0.999

A0A4P9XHN2

0.999

A0A4P9XHZ1

0.999

A0A4P9XI04

0.999

A0A4P9XIB0

0.999

Your Current Organism:

Thamnocephalis sphaerospora

NCBI taxonomy Id: 78915
Other names: T. sphaerospora

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A4P9XG56	A0A4P9XGW7	Ribosomal protein L4 domain-containing protein.	Ribosomal protein L31e-domain-containing protein.	0.999
A0A4P9XG56	A0A4P9XGX7	Ribosomal protein L4 domain-containing protein.	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	0.999
A0A4P9XG56	A0A4P9XH99	Ribosomal protein L4 domain-containing protein.	60S ribosomal protein L21-A.	0.999
A0A4P9XG56	A0A4P9XHB5	Ribosomal protein L4 domain-containing protein.	Translation protein SH3-like domain-containing protein.	0.983
A0A4P9XG56	A0A4P9XHC9	Ribosomal protein L4 domain-containing protein.	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.	0.999
A0A4P9XG56	A0A4P9XHN2	Ribosomal protein L4 domain-containing protein.	Ribosomal protein L34Ae.	0.999
A0A4P9XG56	A0A4P9XHZ1	Ribosomal protein L4 domain-containing protein.	Putative 60S ribosomal protein RPL8.	0.999
A0A4P9XG56	A0A4P9XI04	Ribosomal protein L4 domain-containing protein.	Putative 60S ribosomal protein L27A.	0.999
A0A4P9XG56	A0A4P9XIB0	Ribosomal protein L4 domain-containing protein.	L30e-like protein.	0.999
A0A4P9XG56	A0A4P9XJI3	Ribosomal protein L4 domain-containing protein.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.999
A0A4P9XGW7	A0A4P9XG56	Ribosomal protein L31e-domain-containing protein.	Ribosomal protein L4 domain-containing protein.	0.999
A0A4P9XGW7	A0A4P9XGX7	Ribosomal protein L31e-domain-containing protein.	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	0.999
A0A4P9XGW7	A0A4P9XH99	Ribosomal protein L31e-domain-containing protein.	60S ribosomal protein L21-A.	0.999
A0A4P9XGW7	A0A4P9XHB5	Ribosomal protein L31e-domain-containing protein.	Translation protein SH3-like domain-containing protein.	0.999
A0A4P9XGW7	A0A4P9XHC9	Ribosomal protein L31e-domain-containing protein.	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.	0.999
A0A4P9XGW7	A0A4P9XHN2	Ribosomal protein L31e-domain-containing protein.	Ribosomal protein L34Ae.	0.999
A0A4P9XGW7	A0A4P9XHZ1	Ribosomal protein L31e-domain-containing protein.	Putative 60S ribosomal protein RPL8.	0.999
A0A4P9XGW7	A0A4P9XI04	Ribosomal protein L31e-domain-containing protein.	Putative 60S ribosomal protein L27A.	0.999
A0A4P9XGW7	A0A4P9XIB0	Ribosomal protein L31e-domain-containing protein.	L30e-like protein.	0.999
A0A4P9XGW7	A0A4P9XJI3	Ribosomal protein L31e-domain-containing protein.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.999