A0A4P9XKN3 protein (Thamnocephalis sphaerospora)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A4P9XKN3

NMDA receptor-regulated protein 1. (596 aa)

Predicted Functional Partners:

A0A4P9XXF9

0.990

A0A4P9XWF3

0.987

A0A4P9XQ97

0.932

A0A4P9XKM1

0.929

A0A4P9XV89

0.843

A0A4V1IW13

0.727

A0A4P9XGW7

0.710

A0A4V1IWS1

0.645

A0A4P9XG56

0.631

A0A4P9XVC8

0.627

Your Current Organism:

Thamnocephalis sphaerospora

NCBI taxonomy Id: 78915
Other names: T. sphaerospora

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A4P9XG56	A0A4P9XGW7	Ribosomal protein L4 domain-containing protein.	Ribosomal protein L31e-domain-containing protein.	0.999
A0A4P9XG56	A0A4P9XKM1	Ribosomal protein L4 domain-containing protein.	N-acetyltransferase domain-containing protein.	0.434
A0A4P9XG56	A0A4P9XKN3	Ribosomal protein L4 domain-containing protein.	NMDA receptor-regulated protein 1.	0.631
A0A4P9XG56	A0A4P9XVC8	Ribosomal protein L4 domain-containing protein.	Ribosomal L29 protein-domain-containing protein.	0.999
A0A4P9XG56	A0A4P9XWF3	Ribosomal protein L4 domain-containing protein.	Acyl-CoA N-acyltransferase.	0.556
A0A4P9XG56	A0A4P9XXF9	Ribosomal protein L4 domain-containing protein.	Nat13 protein.	0.554
A0A4P9XG56	A0A4V1IW13	Ribosomal protein L4 domain-containing protein.	Putative 60S ribosomal protein L25; Belongs to the universal ribosomal protein uL23 family.	0.999
A0A4P9XG56	A0A4V1IWS1	Ribosomal protein L4 domain-containing protein.	Ribosomal L39 protein-domain-containing protein.	0.999
A0A4P9XGW7	A0A4P9XG56	Ribosomal protein L31e-domain-containing protein.	Ribosomal protein L4 domain-containing protein.	0.999
A0A4P9XGW7	A0A4P9XKM1	Ribosomal protein L31e-domain-containing protein.	N-acetyltransferase domain-containing protein.	0.451
A0A4P9XGW7	A0A4P9XKN3	Ribosomal protein L31e-domain-containing protein.	NMDA receptor-regulated protein 1.	0.710
A0A4P9XGW7	A0A4P9XVC8	Ribosomal protein L31e-domain-containing protein.	Ribosomal L29 protein-domain-containing protein.	0.999
A0A4P9XGW7	A0A4P9XWF3	Ribosomal protein L31e-domain-containing protein.	Acyl-CoA N-acyltransferase.	0.772
A0A4P9XGW7	A0A4P9XXF9	Ribosomal protein L31e-domain-containing protein.	Nat13 protein.	0.553
A0A4P9XGW7	A0A4V1IW13	Ribosomal protein L31e-domain-containing protein.	Putative 60S ribosomal protein L25; Belongs to the universal ribosomal protein uL23 family.	0.999
A0A4P9XGW7	A0A4V1IWS1	Ribosomal protein L31e-domain-containing protein.	Ribosomal L39 protein-domain-containing protein.	0.999
A0A4P9XKM1	A0A4P9XG56	N-acetyltransferase domain-containing protein.	Ribosomal protein L4 domain-containing protein.	0.434
A0A4P9XKM1	A0A4P9XGW7	N-acetyltransferase domain-containing protein.	Ribosomal protein L31e-domain-containing protein.	0.451
A0A4P9XKM1	A0A4P9XKN3	N-acetyltransferase domain-containing protein.	NMDA receptor-regulated protein 1.	0.929
A0A4P9XKM1	A0A4P9XQ97	N-acetyltransferase domain-containing protein.	Uncharacterized protein.	0.798