A0A4P9XNU4 protein (Thamnocephalis sphaerospora)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A4P9XNU4

Piwi domain-containing protein; Belongs to the argonaute family. (845 aa)

Predicted Functional Partners:

A0A4P9XGS3

0.974

A0A4P9XNE7

0.973

A0A4P9XK03

0.870

A0A4V1IWH3

0.870

A0A4P9XPK5

0.816

A0A4P9XWS8

0.720

A0A4P9XLY7

0.716

A0A4P9XFQ2

0.711

A0A4P9XFR7

0.711

A0A4P9XH33

0.711

Your Current Organism:

Thamnocephalis sphaerospora

NCBI taxonomy Id: 78915
Other names: T. sphaerospora

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A4P9XFQ2	A0A4P9XH33	Uncharacterized protein.	RNA polymerase Rpb1, domain 1-domain-containing protein.	0.892
A0A4P9XFQ2	A0A4P9XNU4	Uncharacterized protein.	Piwi domain-containing protein; Belongs to the argonaute family.	0.711
A0A4P9XFQ2	A0A4P9XWS8	Uncharacterized protein.	Armadillo-type protein.	0.468
A0A4P9XFR7	A0A4P9XNU4	Uncharacterized protein.	Piwi domain-containing protein; Belongs to the argonaute family.	0.711
A0A4P9XFR7	A0A4P9XWS8	Uncharacterized protein.	Armadillo-type protein.	0.468
A0A4P9XGS3	A0A4P9XK03	RanBD1 domain-containing protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.456
A0A4P9XGS3	A0A4P9XNE7	RanBD1 domain-containing protein.	Uncharacterized protein.	0.999
A0A4P9XGS3	A0A4P9XNU4	RanBD1 domain-containing protein.	Piwi domain-containing protein; Belongs to the argonaute family.	0.974
A0A4P9XGS3	A0A4P9XWS8	RanBD1 domain-containing protein.	Armadillo-type protein.	0.992
A0A4P9XGS3	A0A4V1IWH3	RanBD1 domain-containing protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.456
A0A4P9XH33	A0A4P9XFQ2	RNA polymerase Rpb1, domain 1-domain-containing protein.	Uncharacterized protein.	0.892
A0A4P9XH33	A0A4P9XNU4	RNA polymerase Rpb1, domain 1-domain-containing protein.	Piwi domain-containing protein; Belongs to the argonaute family.	0.711
A0A4P9XH33	A0A4P9XWS8	RNA polymerase Rpb1, domain 1-domain-containing protein.	Armadillo-type protein.	0.530
A0A4P9XK03	A0A4P9XGS3	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	RanBD1 domain-containing protein.	0.456
A0A4P9XK03	A0A4P9XNU4	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	Piwi domain-containing protein; Belongs to the argonaute family.	0.870
A0A4P9XLY7	A0A4P9XNU4	Translin.	Piwi domain-containing protein; Belongs to the argonaute family.	0.716
A0A4P9XNE7	A0A4P9XGS3	Uncharacterized protein.	RanBD1 domain-containing protein.	0.999
A0A4P9XNE7	A0A4P9XNU4	Uncharacterized protein.	Piwi domain-containing protein; Belongs to the argonaute family.	0.973
A0A4P9XNE7	A0A4P9XWS8	Uncharacterized protein.	Armadillo-type protein.	0.986
A0A4P9XNU4	A0A4P9XFQ2	Piwi domain-containing protein; Belongs to the argonaute family.	Uncharacterized protein.	0.711