A0A4P9XQC0 protein (Thamnocephalis sphaerospora)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A4P9XQC0

Zinc-finger of the MIZ type in Nse subunit-domain-containing protein. (251 aa)

Predicted Functional Partners:

A0A4P9XND0

0.999

A0A4P9XW47

0.999

A0A4P9XXJ2

0.999

A0A4P9XZ85

0.999

A0A4P9XSS5

0.960

A0A4V1IVK4

0.955

A0A4P9XRE6

0.910

A0A4P9XWE5

0.891

A0A4P9XSA3

0.888

A0A4P9XSC9

0.872

Your Current Organism:

Thamnocephalis sphaerospora

NCBI taxonomy Id: 78915
Other names: T. sphaerospora

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A4P9XND0	A0A4P9XQC0	SMC_N domain-containing protein.	Zinc-finger of the MIZ type in Nse subunit-domain-containing protein.	0.999
A0A4P9XND0	A0A4P9XRE6	SMC_N domain-containing protein.	Structural maintenance of chromosomes protein.	0.929
A0A4P9XND0	A0A4P9XSA3	SMC_N domain-containing protein.	RecF/RecN/SMC.	0.652
A0A4P9XND0	A0A4P9XSC9	SMC_N domain-containing protein.	Ubiquitin-related domain-containing protein.	0.855
A0A4P9XND0	A0A4P9XSS5	SMC_N domain-containing protein.	Uncharacterized protein.	0.960
A0A4P9XND0	A0A4P9XW47	SMC_N domain-containing protein.	Non-structural maintenance of chromosomes element 4; Component of the SMC5-SMC6 complex, that promotes sister chromatid alignment after DNA damage and facilitates double-stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids.	0.999
A0A4P9XND0	A0A4P9XWE5	SMC_N domain-containing protein.	Structural maintenance of chromosomes protein.	0.830
A0A4P9XND0	A0A4P9XXJ2	SMC_N domain-containing protein.	MAGE homology domain-containing protein.	0.999
A0A4P9XND0	A0A4P9XZ85	SMC_N domain-containing protein.	SMC_N domain-containing protein.	0.999
A0A4P9XND0	A0A4V1IVK4	SMC_N domain-containing protein.	SUMO conjugating enzyme Hus5; Belongs to the ubiquitin-conjugating enzyme family.	0.785
A0A4P9XQC0	A0A4P9XND0	Zinc-finger of the MIZ type in Nse subunit-domain-containing protein.	SMC_N domain-containing protein.	0.999
A0A4P9XQC0	A0A4P9XRE6	Zinc-finger of the MIZ type in Nse subunit-domain-containing protein.	Structural maintenance of chromosomes protein.	0.910
A0A4P9XQC0	A0A4P9XSA3	Zinc-finger of the MIZ type in Nse subunit-domain-containing protein.	RecF/RecN/SMC.	0.888
A0A4P9XQC0	A0A4P9XSC9	Zinc-finger of the MIZ type in Nse subunit-domain-containing protein.	Ubiquitin-related domain-containing protein.	0.872
A0A4P9XQC0	A0A4P9XSS5	Zinc-finger of the MIZ type in Nse subunit-domain-containing protein.	Uncharacterized protein.	0.960
A0A4P9XQC0	A0A4P9XW47	Zinc-finger of the MIZ type in Nse subunit-domain-containing protein.	Non-structural maintenance of chromosomes element 4; Component of the SMC5-SMC6 complex, that promotes sister chromatid alignment after DNA damage and facilitates double-stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids.	0.999
A0A4P9XQC0	A0A4P9XWE5	Zinc-finger of the MIZ type in Nse subunit-domain-containing protein.	Structural maintenance of chromosomes protein.	0.891
A0A4P9XQC0	A0A4P9XXJ2	Zinc-finger of the MIZ type in Nse subunit-domain-containing protein.	MAGE homology domain-containing protein.	0.999
A0A4P9XQC0	A0A4P9XZ85	Zinc-finger of the MIZ type in Nse subunit-domain-containing protein.	SMC_N domain-containing protein.	0.999
A0A4P9XQC0	A0A4V1IVK4	Zinc-finger of the MIZ type in Nse subunit-domain-containing protein.	SUMO conjugating enzyme Hus5; Belongs to the ubiquitin-conjugating enzyme family.	0.955