STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TATDN1TatD DNase domain containing 1. (255 aa)    
Predicted Functional Partners:
EIF3E
Eukaryotic translation initiation factor 3 subunit E; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.
   
  
 0.703
TATDN3
TatD DNase domain containing 3.
      
 0.652
TATDN2
Uncharacterized protein.
      
 0.628
APLF
FHA_2 domain-containing protein.
   
  
 0.604
RNF139
Ring finger protein 139.
      
 0.599
NEIL3
Nei like DNA glycosylase 3.
      
 0.588
PNKP
Polynucleotide kinase 3'-phosphatase.
      
 0.588
TDP1
Tyrosyl-DNA phosphodiesterase 1.
   
  
 0.588
NEIL1
Nei like DNA glycosylase 1.
      
 0.587
MTSS1
MTSS I-BAR domain containing 1.
      
 0.586
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
Server load: low (24%) [HD]