STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102365561C3H1-type domain-containing protein. (322 aa)    
Predicted Functional Partners:
TOE1
Uncharacterized protein.
 
     0.941
TMEM181
Transmembrane protein 181.
      
 0.745
DCP2
Decapping mRNA 2.
     
 0.713
TNFAIP3
TNF alpha induced protein 3.
      
 0.652
EXOSC5
Exosome component 5.
     
 0.568
EXOSC8
Exosome component 8.
     
 0.534
EXOSC9
Exosome component 9.
   
 
 0.532
SNUPN
Snurportin-1; Functions as an U snRNP-specific nuclear import adapter. Involved in the trimethylguanosine (m3G)-cap-dependent nuclear import of U snRNPs. Binds specifically to the terminal m3G-cap U snRNAs. Belongs to the snurportin family.
    
 
 0.521
EXOSC3
Exosome component 3.
     
 0.511
EXOSC7
Exosome component 7.
     
 0.507
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.