Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HMGXB4HMG-box containing 4. (570 aa)    
Predicted Functional Partners:
BPTF
Bromodomain PHD finger transcription factor.
    
   0.954
LOC102356004
Zgc:92664.
    
 
 0.908
FOXRED2
FAD dependent oxidoreductase domain containing 2.
      
 0.868
RASD2
RASD family member 2.
      
 0.816
TOM1
Target of myb1 membrane trafficking protein; Belongs to the TOM1 family.
 
    
 0.729
TRIP12
Thyroid hormone receptor interactor 12.
    
 
 0.710
RBFOX2
RNA binding protein fox-1 homolog 2; RNA-binding protein that regulates alternative splicing events.
      
 0.703
NCOR1
Nuclear receptor corepressor 1.
    
   0.700
NCOR2
Nuclear receptor corepressor 2.
    
   0.700
MCM5
DNA helicase; Belongs to the MCM family.
      
 0.652
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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