STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC102351730RING-type domain-containing protein. (353 aa)    
Predicted Functional Partners:
UBE2N
Ubiquitin-conjugating enzyme E2Na; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.700
RPS27A
Ribosomal protein S27a.
    
  0.698
IFIH1
Interferon induced with helicase C domain 1.
   
 0.690
G3BP2
G3BP stress granule assembly factor 2.
   
 
 0.609
G3BP1
G3BP stress granule assembly factor 1.
   
 
 0.590
EIF2AK2
Protein kinase domain-containing protein.
   
 0.577
SQSTM1
Sequestosome 1.
    
 0.569
ASPM
Abnormal spindle microtubule assembly.
    
   0.540
LOC102350907
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.540
KXD1
Ubiquitin-like domain-containing protein.
    
  0.540
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
Server load: medium (58%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.