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STRINGSTRING
DEPDC1 protein (Latimeria chalumnae) - STRING interaction network
"DEPDC1" - DEP domain containing 1 in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DEPDC1DEP domain containing 1 (823 aa)    
Predicted Functional Partners:
TOP2A
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1569 aa)
     
   
  0.962
DLGAP5
Uncharacterized protein; Discs, large (Drosophila) homolog-associated protein 5 (618 aa)
     
   
  0.960
CENPF
Centromere protein F, 350/400kDa (3070 aa)
     
   
  0.955
ARHGAP11A
Rho GTPase activating protein 11A (1011 aa)
     
   
  0.951
KIF11
Kinesin family member 11; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family (1059 aa)
     
   
  0.946
ASPM
Asp (abnormal spindle) homolog, microcephaly associated (Drosophila) (2977 aa)
     
   
  0.921
CEP55
Centrosomal protein 55kDa (468 aa)
     
   
  0.915
CENPE
Centromere protein E, 312kDa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family (397 aa)
     
   
  0.907
KIF20A
Kinesin-like protein; Kinesin family member 20A; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family (905 aa)
     
   
  0.892
KIF15
Kinesin family member 15; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family (1105 aa)
     
   
  0.892
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, Latimeria chalumnae, coelacanth
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