Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H2ZRR7_LATCHAa_trans domain-containing protein. (101 aa)    
Predicted Functional Partners:
ADGB
Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.
      
 0.612
CCDC149
Coiled-coil domain containing 149.
      
 0.592
IQCA1
IQ motif containing with AAA domain 1.
   
  
 0.508
IQCA1L
Uncharacterized protein.
   
  
 0.508
SLC38A9
Solute carrier family 38 member 9.
   
 
 0.483
H2ZW61_LATCH
Uncharacterized protein.
    
 
 0.468
H2ZWV6_LATCH
Multidrug and toxin extrusion protein; Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family.
      
 0.453
SLC44A3
Solute carrier family 44 member 3; Belongs to the CTL (choline transporter-like) family.
      
 0.453
SLC47A1
Multidrug and toxin extrusion protein; Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family.
      
 0.453
FAT1
FAT atypical cadherin 1.
      
 0.439
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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