Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RINT1RAD50 interactor 1. (442 aa)    
Predicted Functional Partners:
ZW10
Zw10 kinetochore protein.
   
 0.999
STX18
Syntaxin 18.
    
 0.998
NBAS
Neuroblastoma amplified sequence.
    
 0.994
USE1
Unconventional SNARE in the ER 1.
    
 0.994
H3AMJ7_LATCH
Nbas_N domain-containing protein.
    
 0.994
SCFD2
Sec1 family domain containing 2; Belongs to the STXBP/unc-18/SEC1 family.
   
 
 0.985
C19orf25
Chromosome 19 open reading frame 25.
    
 
 0.973
SCFD1
Sec1 family domain containing 1; Belongs to the STXBP/unc-18/SEC1 family.
    
 
 0.952
LOC102366142
Uncharacterized protein; Belongs to the synaptobrevin family.
    
 0.892
SEC22B
SEC22 homolog B, vesicle trafficking protein (gene/pseudogene); Belongs to the synaptobrevin family.
    
 0.892
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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