STRINGSTRING
RINT1 protein (Latimeria chalumnae) - STRING interaction network
"RINT1" - RAD50 interactor 1 in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RINT1RAD50 interactor 1 (442 aa)    
Predicted Functional Partners:
STX18
Syntaxin 18 (329 aa)
     
  0.960
USE1
Unconventional SNARE in the ER 1 homolog (S. cerevisiae) (268 aa)
       
  0.912
SEC22B
Uncharacterized protein (215 aa)
     
  0.910
YKT6
YKT6 v-SNARE homolog (S. cerevisiae) (199 aa)
     
  0.892
ENSLACG00000005244
Uncharacterized protein (216 aa)
     
  0.879
ZW10
ZW10, kinetochore associated, homolog (Drosophila) (708 aa)
     
  0.879
SEC22A
SEC22 vesicle trafficking protein homolog A (S. cerevisiae) (304 aa)
     
  0.866
SEC22C
SEC22 vesicle trafficking protein homolog C (S. cerevisiae) (66 aa)
     
  0.866
COPB2
Coatomer protein complex, subunit beta 2 (beta prime) (919 aa)
     
  0.775
RAD50
RAD50 homolog (S. cerevisiae) (1193 aa)
     
 
  0.750
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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