STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NHLRC3NHL repeat containing 3. (221 aa)    
Predicted Functional Partners:
PROSER1
Proline and serine rich 1.
    
 0.926
DOK4
Docking protein 4.
      
 0.793
IGSF21
Immunoglobin superfamily member 21.
    
 0.606
FAM222B
Family with sequence similarity 222 member B.
      
 0.588
STOM
Stomatin.
      
 0.587
ARHGAP19
Rho GTPase activating protein 19.
     
 0.515
DOK6
Docking protein 6.
      
 0.510
NDFIP2
Nedd4 family interacting protein 2.
      
 0.509
ATG16L2
ATG16 autophagy related 16-like 2 (S. cerevisiae).
      
 0.486
ARID5A
AT-rich interaction domain 5A.
    
 
 0.472
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.