STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102365039Cathepsin S; Belongs to the peptidase C1 family. (330 aa)    
Predicted Functional Partners:
CTSD
Cathepsin D; Belongs to the peptidase A1 family.
   
 0.788
LOC102355307
Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.
   
 0.788
BIRC2
Baculoviral IAP repeat containing 2.
   
 
 0.734
LGMN
Legumain.
   
 
 0.697
TLR9
Toll-like receptor 9.
     
 0.672
CTSB
Cathepsin B; Belongs to the peptidase C1 family.
  
0.653
LOC102346472
Uncharacterized protein.
     
 0.653
BIRC5
Baculoviral IAP repeat containing 5.
     
 0.653
CD74
CD74 molecule.
   
 0.614
MMP13
Matrix metallopeptidase 13.
   
 
 0.576
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.