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STRINGSTRING
OMA1 protein (Latimeria chalumnae) - STRING interaction network
OMA1 zinc metallopeptidase in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OMA1OMA1 zinc metallopeptidase (358 aa)    
Predicted Functional Partners:
SUCO
SUN domain containing ossification factor (1247 aa)
           
  0.843
TMED5
Transmembrane emp24 protein transport domain containing 5 (228 aa)
     
   
  0.827
ROMO1
Reactive oxygen species modulator 1 (79 aa)
       
 
  0.825
MYSM1
Myb-like, SWIRM and MPN domains 1 (827 aa)
     
   
  0.817
YME1L1
YME1-like 1 ATPase; Belongs to the AAA ATPase family (682 aa)
   
 
  0.789
WBP1L
WW domain binding protein 1-like a (380 aa)
           
  0.763
XRCC6BP1
Mitochondrial inner membrane protease ATP23; XRCC6 binding protein 1; Belongs to the peptidase M76 family (235 aa)
           
  0.759
PARL
Presenilin associated, rhomboid-like a (373 aa)
   
 
  0.704
ENSLACG00000005706
Si-ch1073-174d20.2 (747 aa)
   
 
  0.682
AFG3L2
AFG3-like AAA ATPase 2 (812 aa)
   
 
  0.682
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, Latimeria chalumnae, coelacanth
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