STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KLHL28Kelch like family member 28. (448 aa)    
Predicted Functional Partners:
KIRREL1
Kirre like nephrin family adhesion molecule 1.
    
 
 0.709
H3A6Z7_LATCH
Bardet-Biedl syndrome 1.
    
 0.684
BBS4
Bardet-Biedl syndrome 4.
    
 0.657
TTC8
Tetratricopeptide repeat domain 8.
    
 0.643
BBS7
Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function.
   
 0.604
H3A1J1_LATCH
WD_REPEATS_REGION domain-containing protein.
    
 
 0.583
FBXO28
F-box protein 28.
      
 0.576
SQSTM1
Sequestosome 1.
    
 0.571
EFEMP1
EGF containing fibulin extracellular matrix protein 1.
    
 0.569
BBS9
Bardet-Biedl syndrome 9.
    
 0.555
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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